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IPython notebook for basic microbial ecology analysis using QIIME

I’ve gone public with my default QIIME workflow. I hope this will be helpful to some, and I encourage anyone with QIIME skills to read through it to see if I’m missing anything.

Brief blog post about it is here:

http://jennomics.com/2015/02/20/ipython-notebook-for-basic-microbial-ecology-analysis-using-qiime/

and the notebook is hosted here:

jennomics.github.io/QIIMEbyJennomics/

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Jenna Lang

Jenna Lang is a postdoctorate associate in Jonathan Eisen's lab and studies the seagrass microbiome.

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