home Journal club Microbial community, microbiome, and metagenomic analysis tools of the week

Microbial community, microbiome, and metagenomic analysis tools of the week

Compiling some of the more interesting tools I have seen recently. Some I have plyed with but most I have just looked at the papers briefly.

Microbiome | Abstract | VizBin – an application for reference-independent visualization and human-augmented binning of metagenomic data.

Global biogeographic sampling of bacterial secondary metabolism

GrammR: Graphical Representation and Modeling of Count Data with Application in Metagenomics

An ensemble strategy that significantly improves de novo assembly of microbial genomes from metagenomic next-generation sequencing data

Improved pipeline for reducing erroneous identification by 16S rRNA sequences using the Illumina MiSeq platform

Improved annotation of antibiotic resistance determinants reveals microbial resistomes cluster by ecology

Shiny-phyloseq: Web application for interactive microbiome analysis with provenance tracking

Phylogenetics and the human microbiome

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